Automation in Protein Discovery
Advancing Intelligent Automation for High-Throughput Protein Science
1/19/2027 - January 20, 2027 ALL TIMES PST
Automation continues to transform protein science workflows, driving greater reproducibility, scalability, and speed across discovery and development. As laboratories advance toward more intelligent and autonomous systems, the integration of robotics, AI-driven experimental design, and real-time analytics enables more adaptive and data-connected research environments. Cambridge Healthtech Institute’s 15th Annual Automation in Protein Discovery track will explore how next-generation automation technologies are reshaping protein expression, purification, and characterization, with a focus on high-throughput systems, autonomous laboratories, and AI-enabled workflow optimization. Attendees will hear how experts are designing integrated platforms that streamline end-to-end discovery, reduce variability, and enable more predictive, data-driven protein science.
Preliminary Agenda

Session Block

PLENARY KEYNOTE SESSION:
(Shared with Co-Located PEGS AI)

Beyond the Funnel: Machine Learning-Powered Lab-in-the-Loop for Drug Discovery

Photo of Richard A. Bonneau, PhD, Vice President, Drug Discovery, Prescient Design, a Genentech Co. , VP , Drug Discovery , Prescient Design a Genentech Co
Richard A. Bonneau, PhD, Vice President, Drug Discovery, Prescient Design, a Genentech Co. , VP , Drug Discovery , Prescient Design a Genentech Co

We will explore how new generative AI methods are uniquely positioned to accelerate and enhance drug discovery, illustrating our "lab in the loop" process for drug discovery and lead optimization. We will differentiate between design modules, where AI can enhance tools' power and accuracy, and process optimization problems, which involve connecting data and models to experimental design for faster and improved drug discovery. The discussion will cover powerful new design modules and multi-modal foundation models that span multiple drug modalities, with primarily focus on small-molecule and large-molecule drug discovery.

Panel Moderator:

FIRESIDE CHAT: AI's Real Impact on Biologic Drug Discovery: The Honest Scorecard

Kristine Deibler, PhD, Director, Molecular Artificial Intelligence, Novo Nordisk AS , Director , Molecular Artificial Intelligence , Novo Nordisk AS

Panelists:

Richard A. Bonneau, PhD, Vice President, Drug Discovery, Prescient Design, a Genentech Co. , VP , Drug Discovery , Prescient Design a Genentech Co

Vanessa Braunstein, Senior Director, TuneLab AI Drug Discovery Platform, Eli Lilly and Company , Senior Director , TuneLab AI Drug Discovery Platform , Eli Lilly & Co

Gevorg Grigoryan, PhD, Co-Founder & CTO, Generate Biomedicines , Co-Founder & CTO , Generate: Biomedicines

Session Block

AUTOMATION ACROSS THE PROTEIN DISCOVERY PIPELINE

Flexible Automation for AI-Driven Antibody Discovery and Validation

Photo of Curtis Walton, PhD, Director of Automation and Process Optimization, Institute for Protein Innovation , Director of Automation and Process Optimization , Institute for Protein Innovation
Curtis Walton, PhD, Director of Automation and Process Optimization, Institute for Protein Innovation , Director of Automation and Process Optimization , Institute for Protein Innovation
Photo of Gayatri Venkiteswaran, PhD, Principal Scientist, Biologics Discovery, Johnson & Johnson Innovative Medicine , Principal Scientist , Biologics Discovery , Johnson & Johnson Innovative Medicine
Gayatri Venkiteswaran, PhD, Principal Scientist, Biologics Discovery, Johnson & Johnson Innovative Medicine , Principal Scientist , Biologics Discovery , Johnson & Johnson Innovative Medicine
Photo of Christopher Kemball, PhD, Senior Principal Scientist, Biochemical & Cellular Pharmacology, Genentech, Inc. , Senior Principal Scientist , Biochemical & Cellular Pharmacology , Genentech Inc
Christopher Kemball, PhD, Senior Principal Scientist, Biochemical & Cellular Pharmacology, Genentech, Inc. , Senior Principal Scientist , Biochemical & Cellular Pharmacology , Genentech Inc

Evaluating T cell-dependent bispecific antibodies with traditional endpoint killing assays fails to capture response kinetics and lacks the throughput needed to screen multiple parameters of activity. To overcome these bottlenecks, we developed an automated, high-throughput 384-well platform that enables concurrent kinetic tracking of target cell cytolysis, T cell activation, and multiplexed cytokine profiling. This integrated workflow leverages customized automation and advanced data analytics to streamline lead candidate selection and rapidly identify optimal combination therapies.

session header for shared

NEXT-GENERATION DISPLAY TECHNOLOGIES AND HIGH-THROUGHPUT SCREENING PLATFORMS

shared with HPF

De novo Design of Miniprotein Cytokine Mimics Targeting IL4Ra by Combining Diffusion Models, MD Simulations, and Phage Display

Photo of Paula Florez, PhD, Postdoctoral Fellow, Protein Sciences, Genentech Inc. , Post Doctoral Fellow , Protein Sciences , Genentech Inc
Paula Florez, PhD, Postdoctoral Fellow, Protein Sciences, Genentech Inc. , Post Doctoral Fellow , Protein Sciences , Genentech Inc

In this work, we developed a novel pipeline for engineering de novo miniproteins to target the Interleukin-4 receptor alpha (IL4Ra), a crucial receptor in Th2-mediated inflammatory diseases currently dominated by monoclonal antibodies. To achieve this, we used a scaffolding strategy to extract key cytokine helices and used RFdiffusion to design the connecting loops. Initial binders with sub-micromolar affinities were then optimized using molecular dynamics and phage display libraries for affinity maturation. Ultimately, this combined generative AI and directed evolution approach yielded high-affinity miniprotein binders, proving that diffusion models can successfully replicate complex cytokine interfaces for next-generation therapeutics.

Chemically Enhanced Phage Display

Photo of Jianmin Gao, PhD, Professor and Chair of Chemistry, Boston College , Professor and Chair , Chemistry , Boston College
Jianmin Gao, PhD, Professor and Chair of Chemistry, Boston College , Professor and Chair , Chemistry , Boston College
Photo of Mette Soendergaard, PhD, Co-Founder & CSO, Cell Origins LLC , Co-Founder & Chief Scientific Officer , Cell Origins LLC
Mette Soendergaard, PhD, Co-Founder & CSO, Cell Origins LLC , Co-Founder & Chief Scientific Officer , Cell Origins LLC
Photo of Jody M. Mason, PhD, Professor, Biochemistry, University of Bath , Professor , Biochemistry , Univ Of Bath
Jody M. Mason, PhD, Professor, Biochemistry, University of Bath , Professor , Biochemistry , Univ Of Bath

Transcription factors and other intracellular protein-protein interactions remain challenging therapeutic targets. This presentation describes an integrated live-cell discovery platform combining genetically encoded peptide libraries, intracellular cyclisation, functional selection and scalable hit validation. By constraining peptides during selection, the workflow enriches cell-tolerated, biostable antagonists that disrupt transcription factor-DNA and protein-protein interactions. The approach links library design, screening, sequencing-based prioritization, biophysical characterization and cellular validation to accelerate discovery of functional, cell-active constrained peptides.

INTELLIGENT AUTOMATION: BUILDING INTEGRATED WORKFLOWS FOR NEXT-GENERATION PROTEIN DISCOVERY

FEATURED PRESENTATION: Design-Built-Test-Learn Cycles for De Novo Miniprotein Discovery

Photo of Emil Peter Thrane Hertz, PhD, Head, Discovery, Skape Bio , Head , Discovery , Skape Bio
Emil Peter Thrane Hertz, PhD, Head, Discovery, Skape Bio , Head , Discovery , Skape Bio

G-protein-coupled receptors (GPCRs) have key roles in physiology and are central targets for drug discovery and development, but the design of protein agonists and antagonists has been challenging as GPCRs are conformationally dynamic integral membrane proteins. Skape Bio will present de novo design methods and a high-throughput microscopy-based screen coupled to semi-automated design-built-test-learn cycles for generation of GPCR-modulating miniproteins with high affinity, potency and selectivity.

Design Principles for Autonomous Protein-Discovery Workflows: Lessons from Design-Build-Test-Learn Cycles

Photo of Haotian Guo, PhD, Founder & CEO, Ailurus Bio , Founder & CEO , Ailurus Bio
Haotian Guo, PhD, Founder & CEO, Ailurus Bio , Founder & CEO , Ailurus Bio
Photo of Behnam Keshavarz, PhD, Senior Scientist, Johnson & Johnson Innovative Medicine , Senior Scientist , Johnson & Johnson Innovative Medicine
Behnam Keshavarz, PhD, Senior Scientist, Johnson & Johnson Innovative Medicine , Senior Scientist , Johnson & Johnson Innovative Medicine

Fit-for-Purpose Automation for High-Throughput Antibody Production and Characterization

Photo of Fengli Zhang, PhD, Senior Scientist II, Protein Production, AbbVie , Senior Scientist II , Protein Production , AbbVie
Fengli Zhang, PhD, Senior Scientist II, Protein Production, AbbVie , Senior Scientist II , Protein Production , AbbVie
Photo of Topia Sarfaraj, Group Leader, Small Scale Antibody Production and Automation, UCB Pharma , Group Leader , Small Scale Antibody Production and Automation , UCB Pharma
Topia Sarfaraj, Group Leader, Small Scale Antibody Production and Automation, UCB Pharma , Group Leader , Small Scale Antibody Production and Automation , UCB Pharma

This presentation describes the integration of automated ÄKTA purification platforms into scalable protein-production workflows. By combining chromatography systems with autosamplers and adaptable, variable-driven methods, these platforms support automated purification across multiple production scales. The approach reduces manual intervention, increases processing capacity and provides the flexibility needed to accommodate diverse proteins, sample volumes and project requirements.

PEPTALK KEYNOTE SESSION

Panel Moderator:

KEYNOTE PANEL: Peptides at the Inflection Point: From Constrained Scaffolds to AI-Designed Clinical Candidates—Where is Peptide Therapeutics Headed?

Charles Johannes, PhD, Founder & Principal, EPOC Scientific; President & Co-Founder, Peptide Drug Hunting Consortium (PDHC) , Founder, Chief Scientist , Exploratory Chemistry , EPOC Scientific LLC

Panelists:

Simon Bailey, PhD, MBA, COO and President, R&D, Unnatural Products, Inc. , COO and President , R&D , Unnatural Products, Inc.

Stephen T. Buckley, PhD, Scientific Vice President, Advanced Drug Delivery, Novo Nordisk A/S , Scientific VP , Advanced Drug Delivery , Novo Nordisk A/S

Tomoyuki Igawa, PhD, Vice President & Head, Discovery Research Division, Chugai Pharmaceutical Co., Ltd. , Vice President, Head , Discovery Research , Chugai Pharmaceutial Co.,Ltd.

Danjuma Quarless, PhD, Senior Director, AI & Biotech Innovation, Lilly Ventures, Eli Lilly & Company , Senior Director - AI & Biotech Innovation , Lilly Ventures , Eli Lilly & Company

Thomas Von Erlach, PhD, CEO & CSO, Vivtex Corporation , CEO & CSO , Vivtex Corporation


For more details on the conference, please contact:

Lynn Brainard

Cambridge Healthtech Institute

Phone: 714-771-4397

Email: brainard@cambridgeinnovationinstitute.com

 

For sponsorship information, please contact:

 

Companies A-K

Jason Gerardi

Sr. Manager, Business Development

Cambridge Healthtech Institute

Phone: 781-972-5452

Email: jgerardi@healthtech.com

 

Companies L-Z

Ashley Parsons

Manager, Business Development

Cambridge Healthtech Institute

Phone: 781-972-1340

Email: ashleyparsons@healthtech.com